PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10575_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 335aa    MW: 37139.5 Da    PI: 6.5019
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10575_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.31.1e-691042712154
       DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..........kskkqsals 87 
                  r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s+  +++++kr re           +s    ++ 
  RrC10575_p1 104 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSSSSRetQNSNAKRLREVdgndndddkdHSGGGGSAL 201
                  7899******************************************************9999888855344444444446777776655566667888 PP

       DUF702  88 stklssaeskkelet.sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                  +t++++++s++ le+ ++lP+evss+avfrcvrvss+++  +++e+aYqtav+igGh+fkGiLydqG++e
  RrC10575_p1 202 ATRVVNTNSNSGLEAiQNLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPDE 271
                  889999998888775166*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-64107270IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.7E-28109151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.3E-26220269IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNKQDHHQ DKSNYLYLYK DEICNTNKGF EIWPPQYFQQ QQEQQQHVTT  60
PTNFYSFGMI PSGSSSSNNN NNRSRGLYFN VVSDHEPGGF TVTRQGGMNC QDCGNQAKKD  120
CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSSSSRE TQNSNAKRLR  180
EVDGNDNDDD KDHSGGGGSA LATRVVNTNS NSGLEAIQNL PPEVSSPAVF RCVRVSSIEE  240
DEDDQEYAYQ TAVNIGGHIF KGILYDQGPD EDHHHQLNLL ASTATTTNAE ETAAKTAVTI  300
AGNNNNGLIL DPSSLYPAQL NSFIAGTPFF TPPRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652439.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A078JW900.0A0A078JW90_BRANA; BnaAnng31570D protein
TrEMBLD2KC760.0D2KC76_BRARP; Short internode related sequence 5
STRINGBra015837.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-150SHI-related sequence 5